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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_10703619_10704111_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10703619 - 10704111
Intron Length:
493

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTGAGTGCA
5'SS Class:
major
3'SS Sequence:
TTCATTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTCATTTTTACA
Flanking Amino Acid:
CMLAREHEKNVSDLEESAGP
Intron Amino Acid Position:
473

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
73.2
30.8
Major BPS
100
1.24
0.5
100
0
Major PPT
88.3
0.86
0.7
83.3
31.7
Minor 5ss
30
-2.3
3.1
37.1
40.4
Minor BPS
55.2
0.16
1.6
67
39.5

Associated Gene:

Gene:
GOLGA1
Ensembl Gene ID:
ENSAPLG00000003658
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003773
10697092 - 10707881
10790