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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_10704892_10705738_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10704892 - 10705738
Intron Length:
847

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCACAA
U12 Branch Point Sequence:
CAGTCCACAATG
Flanking Amino Acid:
ELKKTLQKELKIRPDSEVPE
Intron Amino Acid Position:
547

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.6
0.96
0.8
87
27.7
Major BPS
55.9
0.15
1
63.2
34.1
Major PPT
94
0.99
0.5
92.6
17.2
Minor 5ss
38.8
-1.3
3.4
55
43.6
Minor BPS
46.7
-0.3
1.9
49.74
44.2

Associated Gene:

Gene:
GOLGA1
Ensembl Gene ID:
ENSAPLG00000003658
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003773
10697092 - 10707881
10790