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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_10705910_10706866_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10705910 - 10706866
Intron Length:
957

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAAATG
5'SS Class:
strong_major
3'SS Sequence:
TGGTTTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCATAA
U12 Branch Point Sequence:
AGCATCATAAGC
Flanking Amino Acid:
LKFMSCRESEAFHLIKAVSV
Intron Amino Acid Position:
604

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.1
0.78
0.9
77.9
36.7
Major BPS
56.2
0.16
1
53
33.7
Major PPT
83.7
0.76
0.9
81.2
36.5
Minor 5ss
36.4
-1.5
3.1
48.5
47.2
Minor BPS
44.6
-0.4
1.9
50.75
39.7

Associated Gene:

Gene:
GOLGA1
Ensembl Gene ID:
ENSAPLG00000003658
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003773
10697092 - 10707881
10790