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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_10706954_10707800_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10706954 - 10707800
Intron Length:
847

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTGTCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCATAAT
U12 Branch Point Sequence:
CCCAGCATAATG
Flanking Amino Acid:
NMLKETLEYKMSWFGSKPSP
Intron Amino Acid Position:
633

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.1
0.99
0.8
86
30.3
Major BPS
57.5
0.19
1.3
60.2
42.9
Major PPT
76
0.58
0.8
69.2
36.9
Minor 5ss
35.2
-1.7
3.8
55
49.2
Minor BPS
41.6
-0.7
2
40.07
44.3

Associated Gene:

Gene:
GOLGA1
Ensembl Gene ID:
ENSAPLG00000003658
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003773
10697092 - 10707881
10790