Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_10713093_10713166_R

Intron Information:

Intron Rank:

Intron Class:

minor

Intron Phase:

Intron Coordinates:

10713093 - 10713166

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCG|GTATCCTTG

5'SS Class:

strong_minor

3'SS Sequence:

CGCAGCGCCGCAG|G

3'SS Class:

minor_BPS

U2 Branch Point Sequence:

CCTTGAC

U12 Branch Point Sequence:

CGCTCCTTGACT

Flanking Amino Acid:

PGPEAEALLRRGDALRALHA

Intron Amino Acid Position:

354

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.21

1.2

53.6

45.9

Major BPS

61.6

0.29

1.1

54.6

40.8

Major PPT

54.7

0.11

45.7

36.4

Minor 5ss

83.4

1.13

1.4

81.9

38.3

Minor BPS

74.7

0.86

1.3

79.9

42.3

Associated Gene:

Gene:

PPP6C

Ensembl Gene ID:

ENSAPLG00000031249

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000024430

10711296 - 10716882

5587