Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_10714906_10715040_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

10714906 - 10715040

Intron Length:

135

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCT|GTAAGTGTA

5'SS Class:

major

3'SS Sequence:

TGCCTCTCCCCAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTTTGAC

U12 Branch Point Sequence:

TTTGACTGAAAT

Flanking Amino Acid:

KVFDMLTIAALIDEQILCVH

Intron Amino Acid Position:

350

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.2

0.62

1.1

74.8

35.3

Major BPS

68.7

0.47

1.2

63.1

44.5

Major PPT

73.7

0.53

0.8

65.2

36.2

Minor 5ss

39.2

-1.2

3.4

45.5

Minor BPS

56.3

0.28

1.9

79.58

41.7

Associated Gene:

Gene:

PPP6C

Ensembl Gene ID:

ENSAPLG00000031249

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000018935

10713167 - 10717291

4125