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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_10714906_10716755_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10714906 - 10716755
Intron Length:
1850

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGCGGCCA
5'SS Class:
major
3'SS Sequence:
TGCCTCTCCCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTGAC
U12 Branch Point Sequence:
TTTGACTGAAAT
Flanking Amino Acid:
LQVPARERPQVNRRADPLRA
Intron Amino Acid Position:
43

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.1
0.57
1
59.5
41.1
Major BPS
68.7
0.47
1.2
63.1
44.5
Major PPT
73.7
0.53
0.8
65.2
36.2
Minor 5ss
24.5
-2.9
3.2
30.6
42.8
Minor BPS
56.3
0.28
1.9
79.58
41.7

Associated Gene:

Gene:
PPP6C
Ensembl Gene ID:
ENSAPLG00000031249
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024430
10711296 - 10716882
5587