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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_10718296_10718667_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10718296 - 10718667
Intron Length:
372

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGATG
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTCCCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTACTAT
U12 Branch Point Sequence:
TGAGCATTACTA
Flanking Amino Acid:
FYDDLFCIDTADLTWVKIRA
Intron Amino Acid Position:
223

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.2
0.97
0.8
82.5
37
Major BPS
62.1
0.3
1.4
61.1
45
Major PPT
82
0.72
0.7
76.6
25.5
Minor 5ss
35.9
-1.6
3.3
47.8
47.9
Minor BPS
47.1
-0.2
1.9
58.01
41.6

Associated Gene:

Gene:
RABEPK
Ensembl Gene ID:
ENSAPLG00000003608
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003681
10716986 - 10719369
2384