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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_10721149_10721512_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10721149 - 10721512
Intron Length:
364

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
AATTGTCTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
AATTGTGTAATT
Flanking Amino Acid:
QPTVTIKVYEGERPLTKDNH
Intron Amino Acid Position:
466

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.7
84
26.7
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
72.6
0.51
0.9
63.3
43.2
Minor 5ss
29.9
-2.3
3.2
41.3
45.2
Minor BPS
48.1
-0
2.3
70.85
40.9

Associated Gene:

Gene:
HSPA5
Ensembl Gene ID:
ENSAPLG00000003208
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003304
10720251 - 10724179
3929