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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_10721681_10721876_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10721681 - 10721876
Intron Length:
196

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTAAA
5'SS Class:
strong_major
3'SS Sequence:
CTGTTTGTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCTTGAT
U12 Branch Point Sequence:
TGCCCCTTGATC
Flanking Amino Acid:
AGVLSGDQDTGDLVLLDVCP
Intron Amino Acid Position:
410

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
85.1
25.8
Major BPS
71.5
0.53
1.1
63
43.2
Major PPT
81.4
0.71
0.9
76.3
37.7
Minor 5ss
35.1
-1.7
2.7
42.4
44.3
Minor BPS
65.9
0.48
1.2
67.99
37.8

Associated Gene:

Gene:
HSPA5
Ensembl Gene ID:
ENSAPLG00000003208
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003304
10720251 - 10724179
3929