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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_10722115_10722433_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10722115 - 10722433
Intron Length:
319

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGCTTA
5'SS Class:
strong_major
3'SS Sequence:
CTTGTCTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTCAC
U12 Branch Point Sequence:
ACTGTCCGAACT
Flanking Amino Acid:
TRAKFEELNMDLFRSTMKPV
Intron Amino Acid Position:
331

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
0.9
76.8
34.8
Major BPS
67.3
0.43
1.2
71.3
36.7
Major PPT
85.1
0.79
0.8
76.7
37.4
Minor 5ss
47.6
-0.2
2.8
61.3
44.6
Minor BPS
48.1
-0
1.9
67.43
43.3

Associated Gene:

Gene:
HSPA5
Ensembl Gene ID:
ENSAPLG00000003208
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003304
10720251 - 10724179
3929