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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_10728929_10729664_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
10728929 - 10729664
Intron Length:
736

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAAGACA
5'SS Class:
major
3'SS Sequence:
CCTTTTCTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTCAC
U12 Branch Point Sequence:
AGTGTTGGAATT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.1
0.64
1
70.8
34.5
Major BPS
73.5
0.58
0.9
75.4
28.3
Major PPT
89.8
0.89
0.6
88
22
Minor 5ss
26.5
-2.7
3
31.6
42.4
Minor BPS
42.7
-0.4
2
58.79
39.2

Associated Gene:

Gene:
GAPVD1
Ensembl Gene ID:
ENSAPLG00000003016
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003101
10728840 - 10740902
12063