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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_10732454_10733454_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10732454 - 10733454
Intron Length:
1001

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGAGTC
5'SS Class:
strong_major
3'SS Sequence:
TCTTCCCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
CATTTCAAAACT
Flanking Amino Acid:
MKNNLAKFDKSCVAAFLDVV
Intron Amino Acid Position:
232

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
0.9
76.1
31.5
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
86.6
0.82
0.7
81
24.1
Minor 5ss
36.7
-1.5
3.5
51
39.9
Minor BPS
52.1
0.14
2
73.45
43.3

Associated Gene:

Gene:
GAPVD1
Ensembl Gene ID:
ENSAPLG00000003016
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039297
10729692 - 10734033
4342
ENSAPLT00000003101
10728840 - 10740902
12063