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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_10737513_10738373_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10737513 - 10738373
Intron Length:
861

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAAGGGT
5'SS Class:
major
3'SS Sequence:
TGTGTTTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTCAA
U12 Branch Point Sequence:
GTTACTCAAATT
Flanking Amino Acid:
CSDNLEGISEGPSNRSNSVS
Intron Amino Acid Position:
437

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1
66.3
39.4
Major BPS
77.9
0.69
0.8
77.9
25.8
Major PPT
81.2
0.7
0.9
75.8
38.1
Minor 5ss
24.8
-2.9
3.5
37.8
47.1
Minor BPS
47.9
-0
2
69.96
41.3

Associated Gene:

Gene:
GAPVD1
Ensembl Gene ID:
ENSAPLG00000003016
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003101
10728840 - 10740902
12063