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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_10739386_10739690_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10739386 - 10739690
Intron Length:
305

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACTCAG
5'SS Class:
strong_major
3'SS Sequence:
TTTACTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGTTAA
U12 Branch Point Sequence:
TCTGCTTTACTT
Flanking Amino Acid:
IDEDHLQEIAGAAAENMLGS
Intron Amino Acid Position:
537

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1.1
68.8
43.8
Major BPS
64.3
0.36
1.2
55.7
41.6
Major PPT
89.3
0.88
0.7
84.6
30.1
Minor 5ss
39.1
-1.2
2.9
49.5
46.7
Minor BPS
59
0.36
1.7
74.65
43.4

Associated Gene:

Gene:
GAPVD1
Ensembl Gene ID:
ENSAPLG00000003016
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003101
10728840 - 10740902
12063