About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_10770984_10781929_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10770984 - 10781929
Intron Length:
10946

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
CTTATCTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTTTTCTTATCT
Flanking Amino Acid:
ACDLAEEKSPSHAIFKLTYL
Intron Amino Acid Position:
449

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
80.7
33.7
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
86.1
0.81
0.8
80.6
31.3
Minor 5ss
33.7
-1.9
2.8
42.7
38.3
Minor BPS
79.8
1.01
1.4
95.48
31.1

Associated Gene:

Gene:
MAPKAP1
Ensembl Gene ID:
ENSAPLG00000002845
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002920
10769010 - 10866037
97028