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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_10782068_10787100_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10782068 - 10787100
Intron Length:
5033

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAATCAA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCATCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
CCTTTCTCATCT
Flanking Amino Acid:
RLRFTTDVQLGISGDKVEID
Intron Amino Acid Position:
403

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.9
76.5
34.2
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
83.5
0.75
0.7
81.8
28.5
Minor 5ss
32.9
-2
3
40.7
45.5
Minor BPS
53.1
0.18
1.9
71.23
45.9

Associated Gene:

Gene:
MAPKAP1
Ensembl Gene ID:
ENSAPLG00000002845
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002920
10769010 - 10866037
97028