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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_10787242_10800533_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10787242 - 10800533
Intron Length:
13292

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTACGTTTG
5'SS Class:
major
3'SS Sequence:
GTGTATTTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TGTTCATTATTG
Flanking Amino Acid:
TLEFCLVRENSSRGEEISEE
Intron Amino Acid Position:
356

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.6
0.41
1.1
64
43
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
79.4
0.66
0.9
73.2
41.7
Minor 5ss
44.9
-0.5
3
63.1
42.5
Minor BPS
55.5
0.03
1.9
65.47
42.4

Associated Gene:

Gene:
MAPKAP1
Ensembl Gene ID:
ENSAPLG00000002845
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002920
10769010 - 10866037
97028