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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_10800642_10816795_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10800642 - 10816795
Intron Length:
16154

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTTAT
5'SS Class:
strong_major
3'SS Sequence:
CTTTATGTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAA
U12 Branch Point Sequence:
GTTACTTTATGT
Flanking Amino Acid:
KRRKGSQRGSGPQYRLEKQS
Intron Amino Acid Position:
320

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
80.1
30.7
Major BPS
73.5
0.59
1
81.3
29.9
Major PPT
83.3
0.75
0.9
80.5
36.7
Minor 5ss
35
-1.7
3.2
48.2
47.9
Minor BPS
52.4
0.15
1.9
73.19
43.7

Associated Gene:

Gene:
MAPKAP1
Ensembl Gene ID:
ENSAPLG00000002845
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002920
10769010 - 10866037
97028