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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_10816906_10825966_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10816906 - 10825966
Intron Length:
9061

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTGAGTATG
5'SS Class:
strong_major
3'SS Sequence:
ATCTGTCTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAA
U12 Branch Point Sequence:
TATTTTGTAAAA
Flanking Amino Acid:
LAAKQSLFVRINAAHGFSLI
Intron Amino Acid Position:
283

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.74
1
79.9
34.9
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
79.9
0.67
0.9
73.4
36.5
Minor 5ss
36.3
-1.5
2.9
47
41.7
Minor BPS
52
0.06
2.1
69.01
37.3

Associated Gene:

Gene:
MAPKAP1
Ensembl Gene ID:
ENSAPLG00000002845
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002920
10769010 - 10866037
97028