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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_10831004_10855458_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10831004 - 10855458
Intron Length:
24455

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
ATTTTCTTGACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
ATTTTCTTGACA
Flanking Amino Acid:
FNEYSKFDGKGHVGTTATKK
Intron Amino Acid Position:
167

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.9
1.13
0.6
92.3
16.1
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
80.2
0.68
1
76.8
36.8
Minor 5ss
35
-1.7
2.7
41.8
44.8
Minor BPS
80.5
0.95
1
84.28
28.2

Associated Gene:

Gene:
MAPKAP1
Ensembl Gene ID:
ENSAPLG00000002845
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002920
10769010 - 10866037
97028