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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_10860190_10865006_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10860190 - 10865006
Intron Length:
4817

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
ATTTCTTTTCAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
ATAGTTATAATA
Flanking Amino Acid:
DFGIRRRSNTAQRLERLRKE
Intron Amino Acid Position:
87

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.3
1.11
0.7
90.5
20.5
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
77.4
0.62
1
75.9
37.7
Minor 5ss
34.4
-1.8
3.3
48.7
47.5
Minor BPS
48.6
-0.1
1.6
58.61
35.3

Associated Gene:

Gene:
MAPKAP1
Ensembl Gene ID:
ENSAPLG00000002845
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002920
10769010 - 10866037
97028