Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_10972319_10978858_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

10972319 - 10978858

Intron Length:

6540

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGGCAGC

5'SS Class:

major

3'SS Sequence:

CTCCCCACCGTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCTTCAC

U12 Branch Point Sequence:

GTGTCCTTCACT

Flanking Amino Acid:

AKKCSITVSQVSNWFGNKRI

Intron Amino Acid Position:

238

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.1

0.69

1.1

67.1

44.6

Major BPS

65.1

0.38

1.1

68.9

36.5

Major PPT

64.4

0.32

0.8

58.6

24.7

Minor 5ss

38.3

-1.3

3.1

51.6

45.2

Minor BPS

71.8

0.77

1.8

84.68

41.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000002733

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004193

10964879 - 10984156

19278

ENSAPLT00000002798

10960492 - 10984156

23665