About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_10980268_10981075_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10980268 - 10981075
Intron Length:
808

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAGAA
5'SS Class:
strong_major
3'SS Sequence:
CTCTTACTTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAGAA
U12 Branch Point Sequence:
TTCCTCTTACTT
Flanking Amino Acid:
SQVGANVQSQVDTLRHVINQ
Intron Amino Acid Position:
331

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
71.3
34.5
Major BPS
70
0.5
1
67
39.8
Major PPT
72.4
0.5
1
75.8
32
Minor 5ss
28.3
-2.5
3.5
37.3
47.4
Minor BPS
61
0.42
1.6
76.4
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002733
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004193
10964879 - 10984156
19278
ENSAPLT00000002798
10960492 - 10984156
23665