Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_11031097_11031366_R

Intron Information:

Intron Rank:

129535

Intron Class:

major

Intron Phase:

Intron Coordinates:

11031097 - 11031366

Intron Length:

270

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGATCA

5'SS Class:

strong_major

3'SS Sequence:

TTATCTCCCATAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCTTTAT

U12 Branch Point Sequence:

ATTTCTTTATCT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

91.4

0.98

0.8

80.4

27.6

Major BPS

83.9

0.84

73.9

41.3

Major PPT

74.5

0.55

0.8

69.8

30.8

Minor 5ss

38.2

-1.3

48.6

47.1

Minor BPS

75.8

0.89

1.5

90.23

33.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000016895

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046841

11030558 - 11032339

1782