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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_11078428_11078979_F

Intron Information:

Intron Rank:
144821
Intron Class:
major
Intron Phase:
Intron Coordinates:
11078428 - 11078979
Intron Length:
552

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGACAG
5'SS Class:
major
3'SS Sequence:
GGGTCCTTTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTGAC
U12 Branch Point Sequence:
TAAGCACTGACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.8
0.58
1
58.6
42.2
Major BPS
61.3
0.28
1
52.7
34.2
Major PPT
73.9
0.54
1
69.5
41.6
Minor 5ss
25.4
-2.8
2.8
22.1
37
Minor BPS
45.8
-0.3
2
58.36
40.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028060
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042254
11077605 - 11079267
1663