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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_11182029_11188002_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11182029 - 11188002
Intron Length:
5974

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTA|GTAAGTAGA
5'SS Class:
major
3'SS Sequence:
CTCTTCTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCACAT
U12 Branch Point Sequence:
TGTCTCTTCTTT
Flanking Amino Acid:
RNRAPTGYDVVAQTADGLDA
Intron Amino Acid Position:
39

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
73.5
37.2
Major BPS
65.3
0.38
1.1
72.6
33.1
Major PPT
87.6
0.85
0.7
80.1
32
Minor 5ss
37
-1.5
2.7
44
38.5
Minor BPS
40.5
-0.6
3.5
69.46
41.9

Associated Gene:

Gene:
MVB12B
Ensembl Gene ID:
ENSAPLG00000002612
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029122
11167010 - 11214925
47916
ENSAPLT00000028792
11180770 - 11229933
49164
ENSAPLT00000017246
11148150 - 11242304
94155
ENSAPLT00000034598
11181684 - 11229933
48250
ENSAPLT00000002643
11181403 - 11238647
57245
ENSAPLT00000030934
11167010 - 11238859
71850