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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_11194843_11208171_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11194843 - 11208171
Intron Length:
13329

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTTCCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATCAT
U12 Branch Point Sequence:
ATCATCTTGATT
Flanking Amino Acid:
PSSTPAPNLPRHISLTLPAS
Intron Amino Acid Position:
201

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.9
1.06
0.6
93
14.8
Major BPS
79.4
0.73
1
80.1
32
Major PPT
83.5
0.75
0.7
76.7
32
Minor 5ss
40.7
-1
3
57.8
46.8
Minor BPS
62.5
0.48
1.3
73.18
38

Associated Gene:

Gene:
MVB12B
Ensembl Gene ID:
ENSAPLG00000002612
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030934
11167010 - 11238859
71850
ENSAPLT00000029122
11167010 - 11214925
47916
ENSAPLT00000017246
11148150 - 11242304
94155