Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_1120783_1126541_R

Intron Information:

Intron Rank:

146492

Intron Class:

major

Intron Phase:

Intron Coordinates:

1120783 - 1126541

Intron Length:

5759

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAATATT

5'SS Class:

strong_major

3'SS Sequence:

CTGTCTTTGACAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGTTAAT

U12 Branch Point Sequence:

CTGTCTTTGACA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.2

0.85

0.8

89.3

23.4

Major BPS

84.4

0.85

34.5

Major PPT

75.1

0.57

71.7

38.2

Minor 5ss

35.6

-1.6

50.6

45.9

Minor BPS

71.9

0.68

1.2

73.66

38.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000026177

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000028618

1100948 - 1126863

25916

ENSAPLT00000021205

1119336 - 1126863

7528