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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_11207859_11208171_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11207859 - 11208171
Intron Length:
313

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAGTATTT
5'SS Class:
major
3'SS Sequence:
TTCTCTTCCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATCAT
U12 Branch Point Sequence:
ATCATCTTGATT
Flanking Amino Acid:
EPTLQTDAAARHISLTLPAS
Intron Amino Acid Position:
237

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.8
0.35
1.1
65.7
40.8
Major BPS
79.4
0.73
1
80.1
32
Major PPT
83.5
0.75
0.7
76.7
32
Minor 5ss
43
-0.8
3.5
65.3
45.9
Minor BPS
62.5
0.48
1.3
73.18
38

Associated Gene:

Gene:
MVB12B
Ensembl Gene ID:
ENSAPLG00000002612
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028792
11180770 - 11229933
49164
ENSAPLT00000002643
11181403 - 11238647
57245
ENSAPLT00000034598
11181684 - 11229933
48250