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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_11208270_11229706_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11208270 - 11229706
Intron Length:
21437

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCTGG
5'SS Class:
strong_major
3'SS Sequence:
TTGTCCCTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTGAC
U12 Branch Point Sequence:
TTGTCCCTTACA
Flanking Amino Acid:
HQHSNLYAISAMDGVPFMIS
Intron Amino Acid Position:
270

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
69.7
43.7
Major BPS
62.5
0.31
1.2
54.8
42.1
Major PPT
83.2
0.75
0.8
76.9
31.9
Minor 5ss
43.2
-0.7
2.9
55.9
48.3
Minor BPS
60.8
0.33
2
76.43
40.4

Associated Gene:

Gene:
MVB12B
Ensembl Gene ID:
ENSAPLG00000002612
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002643
11181403 - 11238647
57245
ENSAPLT00000034598
11181684 - 11229933
48250
ENSAPLT00000030934
11167010 - 11238859
71850
ENSAPLT00000028792
11180770 - 11229933
49164
ENSAPLT00000017246
11148150 - 11242304
94155