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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_11231926_11238560_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11231926 - 11238560
Intron Length:
6635

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGTTCC
5'SS Class:
strong_major
3'SS Sequence:
GTCTCTCCCACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CAGGCAG
U12 Branch Point Sequence:
GTCTCTCCCACA
Flanking Amino Acid:
IKTLAEIEKEYDYSFRTEQS
Intron Amino Acid Position:
309

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
75.8
35
Major BPS
36.5
-0.8
1.6
38.4
41.7
Major PPT
75
0.56
0.8
68.7
31.9
Minor 5ss
40.1
-1.1
3
53.2
44.1
Minor BPS
43.3
-0.5
2.2
56.77
42.6

Associated Gene:

Gene:
MVB12B
Ensembl Gene ID:
ENSAPLG00000002612
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030934
11167010 - 11238859
71850
ENSAPLT00000017246
11148150 - 11242304
94155
ENSAPLT00000002643
11181403 - 11238647
57245