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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_11324717_11342224_R

Intron Information:

Intron Rank:
146782
Intron Class:
major
Intron Phase:
Intron Coordinates:
11324717 - 11342224
Intron Length:
17508

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAACCTA
5'SS Class:
major
3'SS Sequence:
TTTGGTTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCAGAT
U12 Branch Point Sequence:
TTTGGTTTCACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1
67.4
39.7
Major BPS
74.1
0.6
1
69
38.9
Major PPT
81.5
0.71
0.9
75.8
38.1
Minor 5ss
35.4
-1.7
3.2
47
48.3
Minor BPS
49.4
-0
2.3
70.26
42.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026287
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024383
11323312 - 11342902
19591