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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_11338510_11342224_R

Intron Information:

Intron Rank:
146783
Intron Class:
major
Intron Phase:
Intron Coordinates:
11338510 - 11342224
Intron Length:
3715

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAACCTA
5'SS Class:
major
3'SS Sequence:
TGCTTATTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTATGCTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1
67.4
39.7
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
82.6
0.73
0.9
76.3
36.8
Minor 5ss
35.4
-1.7
3.2
47
48.3
Minor BPS
59.9
0.39
2
80.58
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026287
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028735
11338472 - 11342902
4431