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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_11463383_11469386_R

Intron Information:

Intron Rank:
146356
Intron Class:
major
Intron Phase:
Intron Coordinates:
11463383 - 11469386
Intron Length:
6004

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
AATTTTTCTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
AATAAATTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.8
81.1
26.8
Major BPS
83
0.82
0.8
82
24.9
Major PPT
79.5
0.66
0.8
74.7
35.2
Minor 5ss
29.7
-2.3
2.6
30.1
36.9
Minor BPS
52.5
0.16
1.8
71.26
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026096
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030535
11454266 - 11490014
35749
ENSAPLT00000026291
11454266 - 11490014
35749
ENSAPLT00000032590
11454266 - 11490014
35749