Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_11469467_11473829_R

Intron Information:

Intron Rank:

146357

Intron Class:

major

Intron Phase:

Intron Coordinates:

11469467 - 11473829

Intron Length:

4363

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAAGTAGT

5'SS Class:

strong_major

3'SS Sequence:

GTTCCTCTTCCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CATTCAA

U12 Branch Point Sequence:

TCAAGCAAAAAT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.4

0.93

0.8

83.5

Major BPS

70.6

0.51

73.3

31.3

Major PPT

82.3

0.73

0.8

73.3

37.1

Minor 5ss

37.6

-1.4

2.8

48.3

42.5

Minor BPS

39.2

-0.7

2.2

55.73

45.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000026096

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000032092

11454266 - 11490014

35749

ENSAPLT00000030535

11454266 - 11490014

35749

ENSAPLT00000026291

11454266 - 11490014

35749