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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_11482260_11483609_R

Intron Information:

Intron Rank:
146377
Intron Class:
major
Intron Phase:
Intron Coordinates:
11482260 - 11483609
Intron Length:
1350

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCTGACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTTCCTGACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
80.8
33.6
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
83.6
0.76
0.9
80.7
31.5
Minor 5ss
36.8
-1.5
2.7
42.7
38.3
Minor BPS
69.4
0.61
1.6
82.95
30.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026096
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044330
11481738 - 11485465
3728