Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_11483658_11485254_R

Intron Information:

Intron Rank:

146352

Intron Class:

major

Intron Phase:

Intron Coordinates:

11483658 - 11485254

Intron Length:

1597

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGGACAT

5'SS Class:

strong_major

3'SS Sequence:

CTATTAAATACAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TATTAAA

U12 Branch Point Sequence:

TTGCTATTAAAT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.2

0.74

71.6

40.1

Major BPS

82.6

0.81

0.8

82.2

24.5

Major PPT

69.8

0.45

63.2

Minor 5ss

32.2

-2

3.4

46.9

48.4

Minor BPS

57.2

0.3

1.7

75.82

40.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000026096

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044330

11481738 - 11485465

3728

ENSAPLT00000024271

11477625 - 11490014

12390