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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_11485313_11488242_R

Intron Information:

Intron Rank:
146353
Intron Class:
major
Intron Phase:
Intron Coordinates:
11485313 - 11488242
Intron Length:
2930

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAGGCAAT
5'SS Class:
major
3'SS Sequence:
TGATGTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTTTACTGATGT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.3
0.57
1.1
70.6
41.3
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
80.2
0.68
0.9
77.1
41.8
Minor 5ss
39.8
-1.1
3.2
53.5
45
Minor BPS
49.4
0.03
2.2
78.01
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026096
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032590
11454266 - 11490014
35749
ENSAPLT00000026291
11454266 - 11490014
35749
ENSAPLT00000024271
11477625 - 11490014
12390