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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_11570144_11571366_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11570144 - 11571366
Intron Length:
1223

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGATTG
5'SS Class:
strong_major
3'SS Sequence:
ACTTTTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
ATCTTCTCACTT
Flanking Amino Acid:
VEICLSNWKSRFHFTSVEMD
Intron Amino Acid Position:
14

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
1
72.7
39.6
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
87.4
0.84
0.7
85.1
28.9
Minor 5ss
40.5
-1.1
3.3
55.8
48.4
Minor BPS
50.6
0.1
1.8
69.65
42.1

Associated Gene:

Gene:
ZBTB34
Ensembl Gene ID:
ENSAPLG00000021289
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042509
11570022 - 11574433
4412