About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_11611894_11612607_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
3UTR
Intron Coordinates:
11611894 - 11612607
Intron Length:
714

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAACAACC
5'SS Class:
major
3'SS Sequence:
GCCTTACTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
AATGCCTTACTT
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1.1
72.5
37.3
Major BPS
100
1.24
0.5
100
0
Major PPT
76.2
0.59
0.9
68.7
36.3
Minor 5ss
40.3
-1.1
2.9
53.5
43.3
Minor BPS
61.1
0.43
1.7
75.28
41.8

Associated Gene:

Gene:
ANGPTL2
Ensembl Gene ID:
ENSAPLG00000012077
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012575
11611605 - 11627526
15922