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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_11615077_11616637_R

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
11615077 - 11616637
Intron Length:
1561

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTATCAGGA
5'SS Class:
weak_major
3'SS Sequence:
CATCCTGTTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTATTTTGAAAT
Flanking Amino Acid:
VWYRGGHYRSRSGYLQKSII
Intron Amino Acid Position:
458

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
58.9
0.21
1.2
50
41.1
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
72.1
0.5
0.9
69.3
36.5
Minor 5ss
41.9
-0.9
3.3
55.6
48.7
Minor BPS
61.9
0.45
1.5
78.71
37

Associated Gene:

Gene:
ANGPTL2
Ensembl Gene ID:
ENSAPLG00000012077
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012575
11611605 - 11627526
15922