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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_11616738_11626669_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11616738 - 11626669
Intron Length:
9932

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTTCCTAAGA
Flanking Amino Acid:
SIPTSTDKPSGNCAHYQKGG
Intron Amino Acid Position:
270

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
88.8
25
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
91.9
0.94
0.6
87.1
23.5
Minor 5ss
37.5
-1.4
2.8
48.3
41.8
Minor BPS
62.6
0.39
2
79.54
36.7

Associated Gene:

Gene:
ANGPTL2
Ensembl Gene ID:
ENSAPLG00000012077
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018444
11615966 - 11627526
11561