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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_11627527_11636649_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
11627527 - 11636649
Intron Length:
9123

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGAATG
5'SS Class:
strong_major
3'SS Sequence:
TATTTTAAAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTATTTTAAAA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
1
75.5
40.6
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
71.5
0.48
1
67.9
41.2
Minor 5ss
36.6
-1.5
3
41.4
44.7
Minor BPS
68.2
0.57
1.4
76.88
33.6

Associated Gene:

Gene:
ANGPTL2
Ensembl Gene ID:
ENSAPLG00000012077
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017338
11615966 - 11636910
20945