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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_11662209_11666748_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11662209 - 11666748
Intron Length:
4540

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAAGTACT
5'SS Class:
strong_major
3'SS Sequence:
ATCATTTTCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAA
U12 Branch Point Sequence:
TTATATTCAAAA
Flanking Amino Acid:
LQKFVEDDNYKESPTTNRFQ
Intron Amino Acid Position:
281

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
87.3
26.9
Major BPS
83
0.82
0.8
83.9
25.3
Major PPT
78.9
0.65
0.9
76.7
36.6
Minor 5ss
40.1
-1.1
2.8
53.2
37.3
Minor BPS
51.5
0.04
1.8
67.18
38.6

Associated Gene:

Gene:
RALGPS1
Ensembl Gene ID:
ENSAPLG00000011266
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019565
11590928 - 11691354
100427