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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_11662209_11669004_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11662209 - 11669004
Intron Length:
6796

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
TTTGTCTAAACA
Flanking Amino Acid:
LQKFVEDDNYKLSLKIEPGN
Intron Amino Acid Position:
281

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
87.3
26.9
Major BPS
84.4
0.85
1
84
34.5
Major PPT
91.6
0.94
0.7
84.6
36
Minor 5ss
40.1
-1.1
2.8
53.2
37.3
Minor BPS
65.7
0.49
1.8
78.35
38.8

Associated Gene:

Gene:
RALGPS1
Ensembl Gene ID:
ENSAPLG00000011266
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011790
11590928 - 11691354
100427