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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_11732383_11733130_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11732383 - 11733130
Intron Length:
748

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTTGA
5'SS Class:
strong_major
3'SS Sequence:
GCTCTGTTTGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
TATTCCTTATTT
Flanking Amino Acid:
TQHFRGHTGAVFSVDYNDEL
Intron Amino Acid Position:
229

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.4
0.88
0.9
76.7
34.9
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
74.6
0.55
0.9
68.8
37.1
Minor 5ss
45.7
-0.5
2.5
58.5
46
Minor BPS
76.5
0.91
1.5
89.27
35.4

Associated Gene:

Gene:
FBXW2
Ensembl Gene ID:
ENSAPLG00000012104
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041339
11726576 - 11735596
9021
ENSAPLT00000012613
11726576 - 11735596
9021