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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_11733194_11733283_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11733194 - 11733283
Intron Length:
90

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TTTGATAACACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
CTTTTGATAACA
Flanking Amino Acid:
LSAKLWDVSTVACWEWSSGA
Intron Amino Acid Position:
178

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1.2
75
35.3
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
68.8
0.42
1
62.6
42
Minor 5ss
28.4
-2.5
2.9
33.4
41.6
Minor BPS
50.7
0.02
2.3
71.45
40.9

Associated Gene:

Gene:
FBXW2
Ensembl Gene ID:
ENSAPLG00000012104
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041339
11726576 - 11735596
9021