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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_11737656_11737873_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11737656 - 11737873
Intron Length:
218

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCGCG
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTGCCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TCCTTCTCATCC
Flanking Amino Acid:
LGYPASDAYQRVQNKKLYLA
Intron Amino Acid Position:
20

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
65.8
40.2
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
78.6
0.64
0.8
76.8
31.9
Minor 5ss
31.2
-2.1
3.2
38.5
46.7
Minor BPS
50.1
-0
1.8
61.59
44.2

Associated Gene:

Gene:
SLC2A8
Ensembl Gene ID:
ENSAPLG00000012226
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012757
11737483 - 11745081
7599