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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_11738034_11738804_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11738034 - 11738804
Intron Length:
771

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTTTTGAAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TATTTTTAAACT
Flanking Amino Acid:
LDSSQASWFGSVVTLGAAAG
Intron Amino Acid Position:
74

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.1
0.9
0.9
82.3
32.2
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
83.7
0.76
0.9
86.3
25.2
Minor 5ss
44.3
-0.6
2.8
53.4
43.8
Minor BPS
68.5
0.66
1.6
84.25
36.7

Associated Gene:

Gene:
SLC2A8
Ensembl Gene ID:
ENSAPLG00000012226
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012757
11737483 - 11745081
7599